1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
#!/usr/bin/env groovy
@Library('StanUtils')
import org.stan.Utils
def setupCC(Boolean failOnError = true) {
errorStr = failOnError ? "-Werror " : ""
"echo CC=${env.CXX} ${errorStr}> make/local"
}
def setup(Boolean failOnError = true) {
sh """
git clean -xffd
${setupCC(failOnError)}
"""
}
def mailBuildResults(String label, additionalEmails='') {
script {
try {
emailext (
subject: "[StanJenkins] ${label}: Job '${env.JOB_NAME} [${env.BUILD_NUMBER}]'",
body: """${label}: Job '${env.JOB_NAME} [${env.BUILD_NUMBER}]': Check console output at ${env.BUILD_URL}""",
recipientProviders: [[$class: 'RequesterRecipientProvider']],
to: "${env.CHANGE_AUTHOR_EMAIL}, ${additionalEmails}"
)
} catch (all) {
println "Encountered the following exception sending email; please ignore:"
println all
println "End ignoreable email-sending exception."
}
}
}
def runTests(String testPath) {
sh "./runTests.py -j${env.PARALLEL} ${testPath} --make-only"
try { sh "./runTests.py -j${env.PARALLEL} ${testPath}" }
finally { junit 'test/**/*.xml' }
}
def utils = new org.stan.Utils()
def isBranch(String b) { env.BRANCH_NAME == b }
String alsoNotify() {
if (isBranch('master') || isBranch('develop')) {
"stan-buildbot@googlegroups.com"
} else ""
}
Boolean isPR() { env.CHANGE_URL != null }
String fork() { env.CHANGE_FORK ?: "stan-dev" }
String branchName() { isPR() ? env.CHANGE_BRANCH :env.BRANCH_NAME }
String cmdstan_pr() { params.cmdstan_pr ?: "downstream tests" }
String stan_pr() { params.stan_pr ?: "downstream tests" }
pipeline {
agent none
parameters {
string(defaultValue: 'downstream tests', name: 'cmdstan_pr',
description: 'PR to test CmdStan upstream against e.g. PR-630')
string(defaultValue: 'downstream tests', name: 'stan_pr',
description: 'PR to test Stan upstream against e.g. PR-630')
booleanParam(defaultValue: false, description:
'Run additional distribution tests on RowVectors (takes 5x as long)',
name: 'withRowVector')
}
options { skipDefaultCheckout() }
stages {
stage('Kill previous builds') {
when {
not { branch 'develop' }
not { branch 'master' }
}
steps {
script {
utils.killOldBuilds()
}
}
}
stage("Clang-format") {
agent any
steps {
sh "printenv"
deleteDir()
retry(3) { checkout scm }
withCredentials([usernamePassword(credentialsId: 'a630aebc-6861-4e69-b497-fd7f496ec46b',
usernameVariable: 'GIT_USERNAME', passwordVariable: 'GIT_PASSWORD')]) {
sh """#!/bin/bash
set -x
git checkout -b ${branchName()}
clang-format --version
find stan test -name '*.hpp' -o -name '*.cpp' | xargs -n20 -P${env.PARALLEL} clang-format -i
if [[ `git diff` != "" ]]; then
git config --global user.email "mc.stanislaw@gmail.com"
git config --global user.name "Stan Jenkins"
git add stan test
git commit -m "[Jenkins] auto-formatting by `clang-format --version`"
git push https://${GIT_USERNAME}:${GIT_PASSWORD}@github.com/${fork()}/math.git ${branchName()}
echo "Exiting build because clang-format found changes."
echo "Those changes are now found on stan-dev/math under branch ${branchName()}"
echo "Please 'git pull' before continuing to develop."
exit 1
fi"""
}
}
post {
always { deleteDir() }
failure {
script {
emailext (
subject: "[StanJenkins] Autoformattted: Job '${env.JOB_NAME} [${env.BUILD_NUMBER}]'",
body: "Job '${env.JOB_NAME} [${env.BUILD_NUMBER}]' " +
"has been autoformatted and the changes committed " +
"to your branch, if permissions allowed." +
"Please pull these changes before continuing." +
"\n\n" +
"See https://github.com/stan-dev/stan/wiki/Coding-Style-and-Idioms" +
" for setting up the autoformatter locally.\n"+
"(Check console output at ${env.BUILD_URL})",
recipientProviders: [[$class: 'RequesterRecipientProvider']],
to: "${env.CHANGE_AUTHOR_EMAIL}"
)
}
}
}
}
stage('Linting & Doc checks') {
agent any
steps {
script {
deleteDir()
retry(3) { checkout scm }
setup(false)
stash 'MathSetup'
sh setupCC()
parallel(
CppLint: { sh "make cpplint" },
Dependencies: { sh 'make test-math-dependencies' } ,
Documentation: { sh 'make doxygen' },
Headers: { sh "make -j${env.PARALLEL} test-headers" }
)
}
}
post {
always {
warnings consoleParsers: [[parserName: 'CppLint']], canRunOnFailed: true
warnings consoleParsers: [[parserName: 'math-dependencies']], canRunOnFailed: true
deleteDir()
}
}
}
stage('Tests') {
parallel {
stage('Unit') {
agent any
steps {
deleteDir()
unstash 'MathSetup'
sh setupCC()
runTests("test/unit")
}
post { always { retry(3) { deleteDir() } } }
}
stage('Unit with GPU') {
agent { label "gelman-group-mac" }
steps {
deleteDir()
unstash 'MathSetup'
sh setupCC()
sh "echo STAN_OPENCL=true>> make/local"
sh "echo OPENCL_PLATFORM_ID=0>> make/local"
sh "echo OPENCL_DEVICE_ID=0>> make/local"
runTests("test/unit")
}
post { always { retry(3) { deleteDir() } } }
}
stage('Unit with MPI') {
agent any
steps {
deleteDir()
unstash 'MathSetup'
sh "echo CC=${MPICXX} >> make/local"
sh "echo STAN_MPI=true >> make/local"
runTests("test/unit")
}
post { always { retry(3) { deleteDir() } } }
}
stage('Distribution tests') {
agent { label "distribution-tests" }
steps {
deleteDir()
unstash 'MathSetup'
sh """
${setupCC(false)}
echo 'O=0' >> make/local
echo N_TESTS=${env.N_TESTS} >> make/local
"""
script {
if (params.withRowVector || isBranch('develop') || isBranch('master')) {
sh "echo CXXFLAGS+=-DSTAN_TEST_ROW_VECTORS >> make/local"
}
}
sh "./runTests.py -j${env.PARALLEL} test/prob > dist.log 2>&1"
}
post {
always {
script { zip zipFile: "dist.log.zip", archive: true, glob: 'dist.log' }
retry(3) { deleteDir() }
}
failure {
echo "Distribution tests failed. Check out dist.log.zip artifact for test logs."
}
}
}
}
}
stage('Upstream tests') {
parallel {
stage('Stan Upstream Tests') {
when { expression { env.BRANCH_NAME ==~ /PR-\d+/ } }
steps {
build(job: "Stan/${stan_pr()}",
parameters: [string(name: 'math_pr', value: env.BRANCH_NAME),
string(name: 'cmdstan_pr', value: cmdstan_pr())])
}
}
}
}
stage('Upload doxygen') {
agent any
when { branch 'master'}
steps {
deleteDir()
retry(3) { checkout scm }
withCredentials([usernamePassword(credentialsId: 'a630aebc-6861-4e69-b497-fd7f496ec46b',
usernameVariable: 'GIT_USERNAME', passwordVariable: 'GIT_PASSWORD')]) {
sh """#!/bin/bash
set -x
make doxygen
git config --global user.email "mc.stanislaw@gmail.com"
git config --global user.name "Stan Jenkins"
git checkout --detach
git branch -D gh-pages
git push https://${GIT_USERNAME}:${GIT_PASSWORD}@github.com/stan-dev/math.git :gh-pages
git checkout --orphan gh-pages
git add -f doc
git commit -m "auto generated docs from Jenkins"
git subtree push --prefix doc/api/html https://${GIT_USERNAME}:${GIT_PASSWORD}@github.com/stan-dev/math.git gh-pages
"""
}
}
post { always { deleteDir() } }
}
}
post {
always {
node("osx || linux") {
warnings consoleParsers: [[parserName: 'GNU C Compiler 4 (gcc)']], canRunOnFailed: true
warnings consoleParsers: [[parserName: 'Clang (LLVM based)']], canRunOnFailed: true
}
}
success {
script { utils.updateUpstream(env, 'stan') }
mailBuildResults("SUCCESSFUL")
}
unstable { mailBuildResults("UNSTABLE", alsoNotify()) }
failure { mailBuildResults("FAILURE", alsoNotify()) }
}
}